2020
|
Hirotaka Iwaki, Hampton L Leonard, Mary B Makarious, Matt Bookman, Barry Landin, David Vismer, Bradford Casey, Raphael J Gibbs, Dena G Hernandez, Cornelis Blauwendraat, others Accelerating Medicines Partnership: Parkinson’s Disease. Genetic Resource Journal Article medRxiv, 2020. @article{iwaki2020accelerating,
title = {Accelerating Medicines Partnership: Parkinson’s Disease. Genetic Resource},
author = {Hirotaka Iwaki and Hampton L Leonard and Mary B Makarious and Matt Bookman and Barry Landin and David Vismer and Bradford Casey and Raphael J Gibbs and Dena G Hernandez and Cornelis Blauwendraat and others},
year = {2020},
date = {2020-01-01},
journal = {medRxiv},
publisher = {Cold Spring Harbor Laboratory Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jacqueline M Tokarew, Daniel Nicolas El Kodsi, Nathalie A Lengacher, Travis K Fehr, Angela P Nguyen, Bojan Shutinoski, Brian O'Nuallain, Ming Jin, Jasmine Khan, Andy CH Ng, others Age-Associated Insolubility of Parkin in Human Midbrain is Linked to Redox Balance and Sequestration of Reactive Dopamine Metabolites Journal Article bioRxiv, 2020. @article{tokarew2020age,
title = {Age-Associated Insolubility of Parkin in Human Midbrain is Linked to Redox Balance and Sequestration of Reactive Dopamine Metabolites},
author = {Jacqueline M Tokarew and Daniel Nicolas El Kodsi and Nathalie A Lengacher and Travis K Fehr and Angela P Nguyen and Bojan Shutinoski and Brian O'Nuallain and Ming Jin and Jasmine Khan and Andy CH Ng and others},
year = {2020},
date = {2020-01-01},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Carmen Domínguez-Baleón, Jue-Sheng Ong, Clemens R Scherzer, Miguel E Rentería, Xianjun Dong Genetic evidence for protective effects of smoking and drinking behavior on Parkinson's disease: A Mendelian Randomization study Journal Article medRxiv, 2020. @article{dominguez2020genetic,
title = {Genetic evidence for protective effects of smoking and drinking behavior on Parkinson's disease: A Mendelian Randomization study},
author = {Carmen Domínguez-Baleón and Jue-Sheng Ong and Clemens R Scherzer and Miguel E Rentería and Xianjun Dong},
year = {2020},
date = {2020-01-01},
journal = {medRxiv},
publisher = {Cold Spring Harbor Laboratory Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Adrian I Campos, Nathan Ingold, Yunru Huang, Pik Fang Kho, Xikun Han, Jue-Sheng Ong, Luis M Garcia-Marin, Matthew H Law, Nicholas G Martin, Xianjun Dong, others Genome-wide analyses in 1,987,836 participants identify 39 genetic loci associated with sleep apnoea Journal Article medRxiv, 2020. @article{campos2020genome,
title = {Genome-wide analyses in 1,987,836 participants identify 39 genetic loci associated with sleep apnoea},
author = {Adrian I Campos and Nathan Ingold and Yunru Huang and Pik Fang Kho and Xikun Han and Jue-Sheng Ong and Luis M Garcia-Marin and Matthew H Law and Nicholas G Martin and Xianjun Dong and others},
year = {2020},
date = {2020-01-01},
journal = {medRxiv},
publisher = {Cold Spring Harbor Laboratory Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Junko Tsuji, Travis Thomson, Elizabeth Chan, Christine K Brown, Julia Oppenheimer, Carol Bigelow, Xianjun Dong, William E Theurkauf, Zhiping Weng, Lawrence M Schwartz High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death Journal Article Physiological Genomics, 52 (10), pp. 492–511, 2020. @article{tsuji2020high,
title = {High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death},
author = {Junko Tsuji and Travis Thomson and Elizabeth Chan and Christine K Brown and Julia Oppenheimer and Carol Bigelow and Xianjun Dong and William E Theurkauf and Zhiping Weng and Lawrence M Schwartz},
year = {2020},
date = {2020-01-01},
journal = {Physiological Genomics},
volume = {52},
number = {10},
pages = {492--511},
publisher = {American Physiological Society Bethesda, MD},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Zhenshen Bao, Yihua Zhu, Qinyu Ge, Wanjun Gu, Xianjun Dong, Yunfei Bai Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions Journal Article IEEE Access, 8 , pp. 138036–138045, 2020. @article{bao2020signaling,
title = {Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions},
author = {Zhenshen Bao and Yihua Zhu and Qinyu Ge and Wanjun Gu and Xianjun Dong and Yunfei Bai},
year = {2020},
date = {2020-01-01},
journal = {IEEE Access},
volume = {8},
pages = {138036--138045},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
|
Zhenshen Bao, Yihua Zhu, Qinyu Ge, Wanjun Gu, Xianjun Dong, Yunfei Bai gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights Journal Article IEEE Access, 7 , pp. 69172–69183, 2019. @article{bao2019gwspia,
title = {gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights},
author = {Zhenshen Bao and Yihua Zhu and Qinyu Ge and Wanjun Gu and Xianjun Dong and Yunfei Bai},
year = {2019},
date = {2019-01-01},
journal = {IEEE Access},
volume = {7},
pages = {69172--69183},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Tao Wang, Junpeng Ruan, Quanwei Yin, Xianjun Dong, Yadong Wang An automated quality control pipeline for eQTL analysis with RNA-seq data Inproceedings 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1780–1786, IEEE 2019. @inproceedings{wang2019automated,
title = {An automated quality control pipeline for eQTL analysis with RNA-seq data},
author = {Tao Wang and Junpeng Ruan and Quanwei Yin and Xianjun Dong and Yadong Wang},
year = {2019},
date = {2019-01-01},
booktitle = {2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
pages = {1780--1786},
organization = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
|
2018
|
Xianjun Dong, Zhixiang Liao, David Gritsch, Yavor Hadzhiev, Yunfei Bai, Joseph J Locascio, Boris Guennewig, Ganqiang Liu, Cornelis Blauwendraat, Tao Wang, others Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease Journal Article Nature neuroscience, 21 (10), pp. 1482–1492, 2018. @article{dong2018enhancers,
title = {Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease},
author = {Xianjun Dong and Zhixiang Liao and David Gritsch and Yavor Hadzhiev and Yunfei Bai and Joseph J Locascio and Boris Guennewig and Ganqiang Liu and Cornelis Blauwendraat and Tao Wang and others},
year = {2018},
date = {2018-01-01},
journal = {Nature neuroscience},
volume = {21},
number = {10},
pages = {1482--1492},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
Shuchi Mittal, Kjetil Bjørnevik, Doo Soon Im, Adrian Flierl, Xianjun Dong, Joseph J Locascio, Kristine M Abo, Elizabeth Long, Ming Jin, Bing Xu, others β2-Adrenoreceptor is a regulator of the α-synuclein gene driving risk of Parkinson’s disease Journal Article Science, 357 (6354), pp. 891–898, 2017. @article{mittal2017beta2,
title = {β2-Adrenoreceptor is a regulator of the α-synuclein gene driving risk of Parkinson’s disease},
author = {Shuchi Mittal and Kjetil Bjørnevik and Doo Soon Im and Adrian Flierl and Xianjun Dong and Joseph J Locascio and Kristine M Abo and Elizabeth Long and Ming Jin and Bing Xu and others},
year = {2017},
date = {2017-01-01},
journal = {Science},
volume = {357},
number = {6354},
pages = {891--898},
publisher = {American Association for the Advancement of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Ganqiang Liu, Brendon Boot, Joseph J Locascio, Zhixiang Liao, Daly Franco, Karen Duong, Kara Page, Iris Jansen, Tom Yi, Ana Trisini-Lipsanopoulos, others Neuropathic Gaucher’s Mutations: Shifting Parkinson’s Into High Gear (S1. 002) Miscellaneous 2017. @misc{liu2017neuropathic,
title = {Neuropathic Gaucher’s Mutations: Shifting Parkinson’s Into High Gear (S1. 002)},
author = {Ganqiang Liu and Brendon Boot and Joseph J Locascio and Zhixiang Liao and Daly Franco and Karen Duong and Kara Page and Iris Jansen and Tom Yi and Ana Trisini-Lipsanopoulos and others},
year = {2017},
date = {2017-01-01},
publisher = {Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
|
2016
|
Ganqiang Liu, Brendon Boot, Joseph J Locascio, Iris E Jansen, Sophie Winder-Rhodes, Shirley Eberly, Alexis Elbaz, Alexis Brice, Bernard Ravina, Jacobus J van Hilten, others Specifically neuropathic Gaucher's mutations accelerate cognitive decline in Parkinson's Journal Article Annals of neurology, 80 (5), pp. 674–685, 2016. @article{liu2016specifically,
title = {Specifically neuropathic Gaucher's mutations accelerate cognitive decline in Parkinson's},
author = {Ganqiang Liu and Brendon Boot and Joseph J Locascio and Iris E Jansen and Sophie Winder-Rhodes and Shirley Eberly and Alexis Elbaz and Alexis Brice and Bernard Ravina and Jacobus J van Hilten and others},
year = {2016},
date = {2016-01-01},
journal = {Annals of neurology},
volume = {80},
number = {5},
pages = {674--685},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2015
|
Joseph J Locascio, Shirley Eberly, Zhixiang Liao, Ganqiang Liu, Ashley N Hoesing, Karen Duong, Ana Trisini-Lipsanopoulos, Kaltra Dhima, Albert Y Hung, Alice W Flaherty, others Association between α-synuclein blood transcripts and early, neuroimaging-supported Parkinson’s disease Journal Article Brain, 138 (9), pp. 2659–2671, 2015. @article{locascio2015association,
title = {Association between α-synuclein blood transcripts and early, neuroimaging-supported Parkinson’s disease},
author = {Joseph J Locascio and Shirley Eberly and Zhixiang Liao and Ganqiang Liu and Ashley N Hoesing and Karen Duong and Ana Trisini-Lipsanopoulos and Kaltra Dhima and Albert Y Hung and Alice W Flaherty and others},
year = {2015},
date = {2015-01-01},
journal = {Brain},
volume = {138},
number = {9},
pages = {2659--2671},
publisher = {Oxford Univ Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xianjun Dong, Junko Tsuji, Adam Labadorf, Panos Roussos, Jiang-Fan Chen, Richard H Myers, Schahram Akbarian, Zhiping Weng The role of H3K4me3 in transcriptional regulation is altered in Huntington’s disease Journal Article PloS one, 10 (12), pp. e0144398, 2015. @article{dong2015role,
title = {The role of H3K4me3 in transcriptional regulation is altered in Huntington’s disease},
author = {Xianjun Dong and Junko Tsuji and Adam Labadorf and Panos Roussos and Jiang-Fan Chen and Richard H Myers and Schahram Akbarian and Zhiping Weng},
year = {2015},
date = {2015-01-01},
journal = {PloS one},
volume = {10},
number = {12},
pages = {e0144398},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2014
|
Guang Bai, Iris Cheung, Hennady P Shulha, Joana E Coelho, Ping Li, Xianjun Dong, Mira Jakovcevski, Yumei Wang, Anastasia Grigorenko, Yan Jiang, others Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains Journal Article Human molecular genetics, pp. ddu561, 2014. @article{bai2014epigenetic,
title = {Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains},
author = {Guang Bai and Iris Cheung and Hennady P Shulha and Joana E Coelho and Ping Li and Xianjun Dong and Mira Jakovcevski and Yumei Wang and Anastasia Grigorenko and Yan Jiang and others},
year = {2014},
date = {2014-01-01},
journal = {Human molecular genetics},
pages = {ddu561},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Andrew G Hoss, Vinay K Kartha, Xianjun Dong, Jeanne C Latourelle, Alexandra Dumitriu, Tiffany C Hadzi, Marcy E MacDonald, James F Gusella, Schahram Akbarian, Jiang-Fan Chen, others MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis Journal Article PLoS Genet, 10 (2), pp. e1004188, 2014. @article{hoss2014micrornas,
title = {MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis},
author = {Andrew G Hoss and Vinay K Kartha and Xianjun Dong and Jeanne C Latourelle and Alexandra Dumitriu and Tiffany C Hadzi and Marcy E MacDonald and James F Gusella and Schahram Akbarian and Jiang-Fan Chen and others},
year = {2014},
date = {2014-01-01},
journal = {PLoS Genet},
volume = {10},
number = {2},
pages = {e1004188},
publisher = {Public Library of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vanja Haberle, Nan Li, Yavor Hadzhiev, Charles Plessy, Christopher Previti, Chirag Nepal, Jochen Gehrig, Xianjun Dong, Altuna Akalin, Ana Maria Suzuki, others Two independent transcription initiation codes overlap on vertebrate core promoters Journal Article Nature, 507 (7492), pp. 381–385, 2014. @article{haberle2014two,
title = {Two independent transcription initiation codes overlap on vertebrate core promoters},
author = {Vanja Haberle and Nan Li and Yavor Hadzhiev and Charles Plessy and Christopher Previti and Chirag Nepal and Jochen Gehrig and Xianjun Dong and Altuna Akalin and Ana Maria Suzuki and others},
year = {2014},
date = {2014-01-01},
journal = {Nature},
volume = {507},
number = {7492},
pages = {381--385},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2013
|
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin Lin, Troy W Whitfield, Melissa C Greven, Brian G Pierce, Xianjun Dong, Anshul Kundaje, Yong Cheng, others 77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors Journal Article Journal of Biomolecular Structure and Dynamics, 31 (sup1), pp. 49–50, 2013. @article{wang201377,
title = {77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors},
author = {Jie Wang and Jiali Zhuang and Sowmya Iyer and Xin Lin and Troy W Whitfield and Melissa C Greven and Brian G Pierce and Xianjun Dong and Anshul Kundaje and Yong Cheng and others},
year = {2013},
date = {2013-01-01},
journal = {Journal of Biomolecular Structure and Dynamics},
volume = {31},
number = {sup1},
pages = {49--50},
publisher = {Routledge},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xin Zhiguo Li, Christian K Roy, Xianjun Dong, Ewelina Bolcun-Filas, Jie Wang, Bo W Han, Jia Xu, Melissa J Moore, John C Schimenti, Zhiping Weng, others An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes Journal Article Molecular cell, 50 (1), pp. 67–81, 2013. @article{li2013ancient,
title = {An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes},
author = {Xin Zhiguo Li and Christian K Roy and Xianjun Dong and Ewelina Bolcun-Filas and Jie Wang and Bo W Han and Jia Xu and Melissa J Moore and John C Schimenti and Zhiping Weng and others},
year = {2013},
date = {2013-01-01},
journal = {Molecular cell},
volume = {50},
number = {1},
pages = {67--81},
publisher = {Cell Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xianjun Dong, Zhiping Weng The correlation between histone modifications and gene expression Journal Article Epigenomics, 5 (2), pp. 113–116, 2013. @article{dong2013correlation,
title = {The correlation between histone modifications and gene expression},
author = {Xianjun Dong and Zhiping Weng},
year = {2013},
date = {2013-01-01},
journal = {Epigenomics},
volume = {5},
number = {2},
pages = {113--116},
publisher = {Future Medicine Ltd London, UK},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2012
|
ENCODE Project Consortium, others An integrated encyclopedia of DNA elements in the human genome Journal Article Nature, 2012. @article{encode2012integrated,
title = {An integrated encyclopedia of DNA elements in the human genome},
author = {ENCODE Project Consortium and others},
year = {2012},
date = {2012-01-01},
journal = {Nature},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C Greven, Bong-Hyun Kim, Jill Moore, Brian G Pierce, Xianjun Dong, Daniel Virgil, others Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium Journal Article Nucleic Acids Research, 2012. @article{wang2012factorbook,
title = {Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium},
author = {Jie Wang and Jiali Zhuang and Sowmya Iyer and Xin-Ying Lin and Melissa C Greven and Bong-Hyun Kim and Jill Moore and Brian G Pierce and Xianjun Dong and Daniel Virgil and others},
year = {2012},
date = {2012-01-01},
journal = {Nucleic Acids Research},
publisher = {Oxford Univ Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xianjun Dong, Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng, Thomas R Gingeras, Mark Gerstein, Roderic Guigó, Ewan Birney, others Modeling gene expression using chromatin features in various cellular contexts Journal Article Genome biology, 13 (9), pp. 1, 2012. @article{dong2012modeling,
title = {Modeling gene expression using chromatin features in various cellular contexts},
author = {Xianjun Dong and Melissa C Greven and Anshul Kundaje and Sarah Djebali and James B Brown and Chao Cheng and Thomas R Gingeras and Mark Gerstein and Roderic Guigó and Ewan Birney and others},
year = {2012},
date = {2012-01-01},
journal = {Genome biology},
volume = {13},
number = {9},
pages = {1},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jie Wang, Jiali Zhuang, Sowmya Iyer, XinYing Lin, Troy W Whitfield, Melissa C Greven, Brian G Pierce, Xianjun Dong, Anshul Kundaje, Yong Cheng, others Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors Journal Article Genome research, 22 (9), pp. 1798–1812, 2012. @article{wang2012sequence,
title = {Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors},
author = {Jie Wang and Jiali Zhuang and Sowmya Iyer and XinYing Lin and Troy W Whitfield and Melissa C Greven and Brian G Pierce and Xianjun Dong and Anshul Kundaje and Yong Cheng and others},
year = {2012},
date = {2012-01-01},
journal = {Genome research},
volume = {22},
number = {9},
pages = {1798--1812},
publisher = {Cold Spring Harbor Lab},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Chao Cheng, Roger Alexander, Renqiang Min, Jing Leng, Kevin Y Yip, Joel Rozowsky, Koon-Kiu Yan, Xianjun Dong, Sarah Djebali, Yijun Ruan, others Understanding transcriptional regulation by integrative analysis of transcription factor binding data Journal Article Genome research, 22 (9), pp. 1658–1667, 2012. @article{cheng2012understanding,
title = {Understanding transcriptional regulation by integrative analysis of transcription factor binding data},
author = {Chao Cheng and Roger Alexander and Renqiang Min and Jing Leng and Kevin Y Yip and Joel Rozowsky and Koon-Kiu Yan and Xianjun Dong and Sarah Djebali and Yijun Ruan and others},
year = {2012},
date = {2012-01-01},
journal = {Genome research},
volume = {22},
number = {9},
pages = {1658--1667},
publisher = {Cold Spring Harbor Lab},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2011
|
ENCODE Project Consortium, others A user’s guide to the encyclopedia of DNA elements (ENCODE) Journal Article PLoS Biol, 9 (4), pp. e1001046, 2011. @article{encode2011user,
title = {A user’s guide to the encyclopedia of DNA elements (ENCODE)},
author = {ENCODE Project Consortium and others},
year = {2011},
date = {2011-01-01},
journal = {PLoS Biol},
volume = {9},
number = {4},
pages = {e1001046},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jie Wang, Jiali Zhuang, Sowmya Iyer, X Lin, Troy Whitfield, Melissa Greven, Shelley Force Aldred, Nathan Trinklein, Xianjun Dong, Anshul Kundaje, others Genome-wide mapping of the binding sites of 119 human transcription factors Journal Article Submitted, NCP010, 2011. @article{wang2011genome,
title = {Genome-wide mapping of the binding sites of 119 human transcription factors},
author = {Jie Wang and Jiali Zhuang and Sowmya Iyer and X Lin and Troy Whitfield and Melissa Greven and Shelley Force Aldred and Nathan Trinklein and Xianjun Dong and Anshul Kundaje and others},
year = {2011},
date = {2011-01-01},
journal = {Submitted, NCP010},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
David Fredman, Xianjun Dong, Boris Lenhard Making enhancers from spare parts of the genome Journal Article Genome biology, 12 (12), pp. 1, 2011. @article{fredman2011making,
title = {Making enhancers from spare parts of the genome},
author = {David Fredman and Xianjun Dong and Boris Lenhard},
year = {2011},
date = {2011-01-01},
journal = {Genome biology},
volume = {12},
number = {12},
pages = {1},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Ozlem Yildirim, Ruowang Li, Jui-Hung Hung, Poshen B Chen, Xianjun Dong, Ly-Sha Ee, Zhiping Weng, Oliver J Rando, Thomas G Fazzio Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells Journal Article Cell, 147 (7), pp. 1498–1510, 2011. @article{yildirim2011mbd3,
title = {Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells},
author = {Ozlem Yildirim and Ruowang Li and Jui-Hung Hung and Poshen B Chen and Xianjun Dong and Ly-Sha Ee and Zhiping Weng and Oliver J Rando and Thomas G Fazzio},
year = {2011},
date = {2011-01-01},
journal = {Cell},
volume = {147},
number = {7},
pages = {1498--1510},
publisher = {Cell Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2010
|
Xianjun Dong, Pavla Navratilova, David Fredman, Øyvind Drivenes, Thomas S Becker, Boris Lenhard Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons Journal Article Nucleic acids research, 38 (4), pp. 1071–1085, 2010. @article{dong2010exonic,
title = {Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons},
author = {Xianjun Dong and Pavla Navratilova and David Fredman and Øyvind Drivenes and Thomas S Becker and Boris Lenhard},
year = {2010},
date = {2010-01-01},
journal = {Nucleic acids research},
volume = {38},
number = {4},
pages = {1071--1085},
publisher = {Oxford Univ Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard Translog, a web browser for studying the expression divergence of homologous genes Journal Article BMC bioinformatics, 11 (1), pp. 1, 2010. @article{dong2010translog,
title = {Translog, a web browser for studying the expression divergence of homologous genes},
author = {Xianjun Dong and Altuna Akalin and Yogita Sharma and Boris Lenhard},
year = {2010},
date = {2010-01-01},
journal = {BMC bioinformatics},
volume = {11},
number = {1},
pages = {1},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2009
|
Xianjun Dong, David Fredman, Boris Lenhard Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes Journal Article Genome biology, 10 (8), pp. 1, 2009. @article{dong2009synorth,
title = {Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes},
author = {Xianjun Dong and David Fredman and Boris Lenhard},
year = {2009},
date = {2009-01-01},
journal = {Genome biology},
volume = {10},
number = {8},
pages = {1},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Xianjun Dong The brainstorm Journal Article IEEE Potentials, 28 (1), pp. 8–9, 2009. @article{dong2009brainstorm,
title = {The brainstorm},
author = {Xianjun Dong},
year = {2009},
date = {2009-01-01},
journal = {IEEE Potentials},
volume = {28},
number = {1},
pages = {8--9},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Altuna Akalin, David Fredman, Erik Arner, Xianjun Dong, Jan Christian Bryne, Harukazu Suzuki, Carsten O Daub, Yoshihide Hayashizaki, Boris Lenhard Transcriptional features of genomic regulatory blocks Journal Article Genome biology, 10 (4), pp. 1, 2009. @article{akalin2009transcriptional,
title = {Transcriptional features of genomic regulatory blocks},
author = {Altuna Akalin and David Fredman and Erik Arner and Xianjun Dong and Jan Christian Bryne and Harukazu Suzuki and Carsten O Daub and Yoshihide Hayashizaki and Boris Lenhard},
year = {2009},
date = {2009-01-01},
journal = {Genome biology},
volume = {10},
number = {4},
pages = {1},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2008
|
Sutada Mungpakdee, Hee-Chan Seo, Anna Rita Angotzi, Xianjun Dong, Altuna Akalin, Daniel Chourrout Differential evolution of the 13 Atlantic salmon Hox clusters Journal Article Molecular Biology and Evolution, 25 (7), pp. 1333–1343, 2008. @article{mungpakdee2008differential,
title = {Differential evolution of the 13 Atlantic salmon Hox clusters},
author = {Sutada Mungpakdee and Hee-Chan Seo and Anna Rita Angotzi and Xianjun Dong and Altuna Akalin and Daniel Chourrout},
year = {2008},
date = {2008-01-01},
journal = {Molecular Biology and Evolution},
volume = {25},
number = {7},
pages = {1333--1343},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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